After moving forward with the Meraki MDM APNs certificate, creating a new Apple ID, I determined that the Apple Server 3.0 must create the certificate behind the scenes.
Here's a screenshot of the certificates within the Apple Certificates Portal for the Apple Server.
Here's a screenshot of the certificate within the Apple Certificate Portal for the Meraki MDM.
As you can see the Certificate Portal must be differentiating between APNs automatically established by Apple Server and third party MDMs.