Well, first, that article is quite old - it predates Windows 2000.
Second, Mark's description of the "clock" algorithm is incomplete. When the Mm finds an Accessed bit set in a PTE, it clears it. Fine so far. But if it finds the bit is already clear, it increments a counter in that page's working set list entry (WSLE). Thus higher counter values correspond to pages that were accessed longer ago.
There is no need to be so precise as to record timestamps.